[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 207 items for (author: li & xy)

EMDB-41314:
Structure of Gabija AB complex
Method: single particle / : Shen ZF, Yang XY, Fu TM

EMDB-41319:
Structure of Gabija AB complex
Method: single particle / : Shen ZF, Yang XY, Fu TM

EMDB-41321:
Structure of Gabija AB complex 1
Method: single particle / : Shen ZF, Yang XY, Fu TM

EMDB-37919:
Cryo-EM structure of DSR2 apo complex
Method: single particle / : Zhang JT, Jia N, Liu XY

EMDB-37920:
Cryo-EM structure of DSR2 apo (partial) complex
Method: single particle / : Zhang JT, Jia N, Liu XY

EMDB-37921:
Cryo-EM structure of DSR2-tube complex
Method: single particle / : Zhang JT, Jia N, Liu XY

EMDB-37922:
Cryo-EM structure of DSR2 (H171A)-tube-NAD+ complex
Method: single particle / : Zhang JT, Jia N, Liu XY

EMDB-37923:
Cryo-EM structure of DSR2 (H171A)-tube-NAD+ (partial) complex
Method: single particle / : Zhang JT, Jia N, Liu XY

EMDB-37924:
Cryo-EM structure of DSR2-DSAD1 complex
Method: single particle / : Zhang JT, Jia N, Liu XY

EMDB-37925:
Cryo-EM structure of DSR2-DSAD1 (partial) complex
Method: single particle / : Zhang JT, Jia N, Liu XY

EMDB-37926:
Cryo-EM structure of DSR2-DSAD1-NAD+ (partial) complex
Method: single particle / : Zhang JT, Jia N, Liu XY

EMDB-40762:
E. coli SIR2-HerA complex (hexamer HerA bound with dodecamer Sir2)
Method: single particle / : Shen ZF, Lin QP, Fu TM

EMDB-40778:
E. coli SIR2-HerA complex (dodecamer SIR2 bound 4 protomers of HerA)
Method: single particle / : Shen ZF, Lin QP, Fu TM

EMDB-35714:
Cryo-EM structure of Long-wave-sensitive opsin 1
Method: single particle / : Peng Q, Cheng XY, Li J, Lu QY, Li YY, Zhang J

EMDB-36678:
PSI-AcpPCI supercomplex from Amphidinium carterae
Method: single particle / : Li ZH, Li XY, Wang WD

EMDB-36742:
PSI-AcpPCI supercomplex from Symbiodinium
Method: single particle / : Li ZH, Li XY, Wang WD

EMDB-36743:
PSI-AcpPCI supercomplex from Symbiodinium
Method: single particle / : Li XY, Li ZH, Wang WD

EMDB-35239:
Prefusion spike of BA.1 with all-RBD-down conformation
Method: subtomogram averaging / : Gao YZ, Ma XY, Liu Z

EMDB-35419:
Cryo-EM structure of monomeric SPARTA gRNA-ssDNA target complex
Method: single particle / : Zhang JT, Jia N, Huang HD

EMDB-35420:
Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state1
Method: single particle / : Zhang JT, Jia N, Huang HD

EMDB-35421:
Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2
Method: single particle / : Zhang JT, Jia N, Huang HD

EMDB-36843:
Cryo-EM structure of SPARTA gRNA binary complex
Method: single particle / : Zhang JT, Jia N, Huang HD

EMDB-36057:
Cryo-EM map of DAM (a newly designed immunogen for monkeypox virus) in complex with half of the antigen-binding fragment (Fab) of A27D7 and the single-chain fragment variable (scFv) of 7D11
Method: single particle / : Wang H, Yin P, Zheng TT, Han P, Qi JX

EMDB-40779:
Structure of E. coli PtuA hexamer
Method: single particle / : Shen ZF, Yang XY, Fu TM

EMDB-28045:
Structure of PtuA
Method: single particle / : Shen ZF, Fu TM

EMDB-28048:
Structure of focused PtuA(dimer) and PtuB(monomer) complex
Method: single particle / : Shen ZF, Fu TM

EMDB-37203:
Cryo-EM structure of HSV-1 gB with D48 Fab complex
Method: single particle / : Yang J, Sun C, Fang X, Zeng M, Liu Z

EMDB-28049:
Structure of E.coli Septu (PtuAB) complex
Method: single particle / : Shen ZF, Fu TM

EMDB-40763:
E. coli SIR2-HerA complex (dodecamer SIR2 pentamer HerA)
Method: single particle / : Shen ZF, Lin QP, Fu TM

EMDB-40860:
E. coli dodecamer SIR2
Method: single particle / : Shen ZF, Lin QP, Fu TM

EMDB-42061:
E. coli Sir2_HerA complex (12:6) with ATPgamaS
Method: single particle / : Shen ZF, Lin QP, Fu TM

EMDB-42062:
E. coli Sir2_HerA complex (12:6) bound with NAD+
Method: single particle / : Shen ZF, Lin QP, Fu TM

EMDB-16647:
Cryo-EM structure of RNase J from Helicobacter pylori
Method: single particle / : Lulla A, Luisi BF

EMDB-36056:
Cryo-EM map of half of DAM (the A35 part) in complex with the antigen-binding fragment (Fab) of A27D7
Method: single particle / : Wang H, Yin P, Zheng TT, Qin LJ, Han P, Qi JX

EMDB-34908:
Cryo-EM structure of ligand histamine-bound Histamine H4 receptor Gi complex
Method: single particle / : Tang WQ, Sun XY, Li FH, Wang JY

EMDB-34925:
Cryo-EM structure of ligand histamine-bound Histamine H4 receptor Gi complex
Method: single particle / : Tang WQ, Sun XY, Li FH, Wang JY

EMDB-37716:
Human calcium-sensing receptor bound with cinacalcet in detergent
Method: single particle / : Ling SL, Meng XY, Tian CL

EMDB-37724:
Human calcium-sensing receptor(CaSR) bound to cinacalcet in complex with Gq protein
Method: single particle / : Ling SL, Meng XY, Tian CL

EMDB-35775:
The rice Na+/H+ antiporter SOS1 in an auto-inhibited state
Method: single particle / : Zhang XY, Tang LH, Zhang CR, Nie JW

EMDB-35950:
The truncated rice Na+/H+ antiporter SOS1 (1-976) in a constitutively active state
Method: single particle / : Zhang XY, Tang LH, Zhang CR, Nie JW

EMDB-34948:
Cryo-EM structure of the apo-GPR132-Gi
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-34950:
Activation mechanism of GPR132 by NPGLY
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-34951:
Activation mechanism of GPR132 by 9(S)-HODE
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-35044:
Activation mechanism of GPR132 by compound NOX-6-7
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-35601:
Cryo-EM structure of the alpha-MSH-bound human melanocortin receptor 5 (MC5R)-Gs complex
Method: single particle / : Feng WB, Zhou QT, Chen XY, Dai AT, Cai XQ, Liu X, Zhao FH, Chen Y, Ye CY, Xu YN, Cong ZT, Li H, Lin S, Yang DH, Wang MW

EMDB-35615:
Cryo-EM structure of the gamma-MSH-bound human melanocortin receptor 3 (MC3R)-Gs complex
Method: single particle / : Feng WB, Zhou QT, Chen XY, Dai AT, Cai XQ, Liu X, Zhao FH, Chen Y, Ye CY, Xu YN, Cong ZT, Li H, Lin S

EMDB-35616:
Cryo-EM structure of the PG-901-bound human melanocortin receptor 5 (MC5R)-Gs complex
Method: single particle / : Feng WB, Zhou QT, Chen XY, Dai AT, Cai XQ, Liu X, Zhao FH, Chen Y, Ye CY, Xu YN, Cong ZT, Li H, Lin S, Yang DH, Wang MW

EMDB-34338:
Postfusion spike of BA.1.1
Method: subtomogram averaging / : Gao YZ, Ma XY, Liu Z

EMDB-34339:
Prefusion spike protein of BA.1.1 with one-RBD-up conformation
Method: subtomogram averaging / : Gao YZ, Ma XY, Liu Z

EMDB-34340:
Prefusion spike of BA.2.3 with one-RBD-up conformation
Method: subtomogram averaging / : Gao YZ, Ma XY, Liu Z

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more